PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019144.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 574aa    MW: 59556 Da    PI: 5.9504
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019144.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.4e-1790139255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Do019144.1  90 TFRGVRMRV-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 139
                 58****999.**********843...6***********************9987 PP

2AP257.72.9e-18388437255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr +  +g+Wv+eIr+p++   + r++lg+f+t+e+Aa+a++ a+++++g
  Do019144.1 388 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFDTPEMAARAHDVAALAIKG 437
                 69****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.7E-3790153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-3190148IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-2090148IPR016177DNA-binding domain
PROSITE profilePS5103222.81390147IPR001471AP2/ERF domain
PfamPF008474.9E-1191139IPR001471AP2/ERF domain
CDDcd000183.06E-2891149No hitNo description
PROSITE profilePS5103223.182388445IPR001471AP2/ERF domain
SMARTSM003803.5E-36388451IPR001471AP2/ERF domain
PfamPF008471.9E-12388437IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-32388446IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-21388446IPR016177DNA-binding domain
CDDcd000181.50E-29389446No hitNo description
PRINTSPR003675.1E-10389400IPR001471AP2/ERF domain
PRINTSPR003675.1E-10411427IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MEADAIHAPT TSSSSSDSGA GSCVINGAQE LVSKNGGKPH HKHAKLKRAA SPPPAAPGGR  60
RAPEAATVDE RAEEGSSSRK RGSAGTRHPT FRGVRMRVWG KWVSEIREPR KKSRIWLGTF  120
PTAEMAARAH DVAALAIKGR AAHLNFPHLA HELPRPASTA PADIQAAAAI AAAAAAADVE  180
QCDSSHATEM SSSSAASSEK VAASSMAAAA AADVEQCESS PAAETSSRSS AASSVEAAAG  240
HSEENVLFDL PDLLLDLSDG LWSPIWAAAP AAVEESLSTD DDDGGGANFL IPSYKYIARS  300
LPPGARNKVI THHMSLLETA SRAQCSPAME VERALSPVSE ASTTTCSSGS GGPGSPAASS  360
PSSDDSGGAV ASAASSRKRP RRELKHPTYR GVRMRAWGKW VSEIREPRKK SRIWLGTFDT  420
PEMAARAHDV AALAIKGRAA HLNFPDMSHK LPRAASAAPE DVRDAAALAA AMESAAAPAA  480
SSDSSHGAGN GNDKDEEPAA SASSGHDACN GAQVEEPAAP SDEHAVLADG HVLDLALLEL  540
PDVLLEFGFE FALPPTTPCC YDLSWDEPLL LWEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1491445263ATERF1
3gcc_A6e-1491445263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953341.11e-117PREDICTED: dehydration-responsive element-binding protein 3-like
TrEMBLA0A096QGD31e-110A0A096QGD3_MAIZE; Uncharacterized protein
STRINGGRMZM2G041839_P011e-110(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.14e-39ERF family protein